GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
GUB_WAK_bind - Wall-associated receptor kinase galacturonan-binding
Pfam: PF13947 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 106
Sequences: 1116
Seq/Len: 10.53
HH_delta: 0.922 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
4_C23_C0.419863.159
31_L51_V0.320472.411
60_T96_S0.274342.064
7_S10_N0.259841.955
51_V54_I0.249821.880
7_S12_S0.222181.672
4_C9_G0.203481.531
55_S58_N0.202191.521
6_S12_S0.198421.493
9_G23_C0.195471.471
34_N39_P0.192531.449
66_P71_C0.191541.441
25_R28_G0.190071.430
5_P19_I0.189931.429
82_S85_S0.188661.419
28_G61_I0.184461.388
31_L42_L0.183841.383
13_I42_L0.183221.379
36_N39_P0.182791.375
41_K50_E0.181311.364
97_N103_G0.180741.360
73_S77_S0.175141.318
83_N86_L0.170851.285
82_S86_L0.169231.273
14_P101_V0.159491.200
24_G49_Y0.1561.174
14_P56_Y0.155991.174
72_Y100_T0.15531.168
11_V42_L0.153521.155
3_G6_S0.150751.134
51_V61_I0.149691.126
14_P97_N0.148911.120
85_S88_G0.148191.115
54_I102_V0.145981.098
49_Y64_S0.145221.093
6_S98_K0.144271.085
91_F94_S0.144171.085
55_S62_R0.144151.085
90_F93_S0.141241.063
21_P24_G0.14061.058
49_Y63_V0.140281.055
84_L87_N0.138921.045
4_C8_C0.138371.041
7_S94_S0.137921.038
72_Y102_V0.136861.030
53_S62_R0.135611.020
18_G22_G0.135291.018
68_S99_F0.134731.014
52_L68_S0.134541.012
52_L64_S0.133111.002
39_P52_L0.131450.989
74_S77_S0.131360.988
15_Y20_G0.130850.985
15_Y40_P0.129190.972
5_P12_S0.128250.965
17_F29_F0.126130.949
55_S101_V0.125650.945
18_G24_G0.12490.940
7_S20_G0.124580.937
18_G103_G0.124510.937
36_N52_L0.124380.936
28_G65_D0.12390.932
29_F91_F0.123510.929
60_T71_C0.123360.928
56_Y99_F0.122670.923
19_I56_Y0.122050.918
46_S88_G0.1220.918
70_N95_S0.121520.914
20_G56_Y0.120850.909
70_N74_S0.120350.906
39_P61_I0.11880.894
15_Y32_T0.118590.892
13_I54_I0.11820.889
21_P102_V0.118170.889
76_S87_N0.117560.885
13_I19_I0.117330.883
9_G18_G0.11490.864
27_P92_F0.114030.858
11_V68_S0.113870.857
28_G57_E0.113750.856
73_S76_S0.113110.851
11_V18_G0.113030.850
55_S60_T0.112660.848
6_S21_P0.11160.840
23_C33_C0.111390.838
42_L102_V0.111330.838
21_P25_R0.110830.834
34_N86_L0.110740.833
72_Y87_N0.110710.833
35_N52_L0.110520.832
44_L50_E0.11050.831
75_S78_N0.110430.831
98_K102_V0.11040.831
44_L66_P0.109430.823
35_N39_P0.109210.822
21_P32_T0.109190.822
68_S71_C0.109130.821
19_I44_L0.108360.815
21_P30_E0.108220.814
60_T100_T0.108060.813
62_R98_K0.107870.812
90_F94_S0.107770.811
19_I24_G0.107620.810
54_I62_R0.107490.809
3_G95_S0.107410.808
50_E99_F0.107390.808
22_G31_L0.107140.806
11_V93_S0.106550.802
55_S63_V0.106460.801
99_F102_V0.105790.796
43_L50_E0.105680.795
6_S27_P0.105210.792
68_S100_T0.105140.791
11_V29_F0.104560.787
77_S83_N0.103930.782
77_S84_L0.103920.782
36_N40_P0.103550.779
42_L104_C0.10340.778
27_P41_K0.10330.777
6_S14_P0.1030.775
8_C33_C0.102940.775
25_R29_F0.102890.774
74_S104_C0.102570.772
19_I31_L0.102350.770
75_S83_N0.101550.764
52_L65_D0.101360.763
99_F103_G0.101250.762
41_K44_L0.100580.757
82_S87_N0.10030.755
10_N59_G0.099820.751
15_Y91_F0.098860.744
11_V96_S0.098370.740
5_P22_G0.09770.735
3_G10_N0.097470.733
3_G70_N0.096960.730
35_N85_S0.096750.728
73_S78_N0.096750.728
34_N48_N0.096410.725
24_G101_V0.095890.721
45_S87_N0.095840.721
25_R30_E0.095780.721
11_V103_G0.095490.718
32_T53_S0.095440.718
27_P64_S0.09510.716
74_S78_N0.094150.708
8_C23_C0.09410.708
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
2cq7A0.16044.10.922
1h7bA0.42452.50.93
2hm3A0.10382.20.931
2kdxA0.424520.933
3w0fA0.349120.933
2eg9A0.35851.70.935
1q5xA0.33961.40.938
3j20W0.38681.40.938
2hgoA0.16041.40.938
3siqA0.33961.40.938
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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