GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
PMR5N - PMR5 N terminal Domain
Pfam: PF14416 (v27) Consensus Sequence
Download Alignment
(Note: includes all positions in family; we filtered this alignment to remove sites that had > 75% gaps before running GREMLIN. )
Length: 55
Sequences: 642
Seq/Len: 11.67
HH_delta: 0.916 (20Jul13)
GREMLIN Results:
Residue pairs sorted by strength in covariance:

Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] gremlin predictions, sequence seperation > 3. The i and j are positions as given in the consensus sequence. Show Scaled Distribution

ij Raw Score Scaled Score
10_R52_R0.412172.113
29_D32_F0.411142.108
8_D52_R0.391382.007
41_D44_Y0.304771.563
8_D53_G0.286781.470
27_F37_N0.276951.420
29_D45_L0.276461.417
30_E37_N0.268291.375
48_R51_P0.260231.334
4_C9_G0.252981.297
43_D47_W0.246331.263
28_I33_N0.241431.238
30_E36_K0.241031.236
24_T29_D0.239421.227
26_P35_Q0.237041.215
50_Q55_D0.236351.212
22_N45_L0.23431.201
35_Q44_Y0.231291.186
42_S47_W0.22331.145
3_R8_D0.22071.131
13_P47_W0.219251.124
14_D55_D0.215711.106
51_P54_C0.214541.100
3_R12_V0.213541.095
35_Q45_L0.207331.063
28_I32_F0.206271.058
28_I31_G0.205981.056
39_R44_Y0.205821.055
33_N36_K0.205081.051
43_D55_D0.204461.048
33_N45_L0.201061.031
3_R19_L0.200951.030
13_P36_K0.198841.019
17_Y32_F0.196731.009
27_F32_F0.195251.001
3_R15_P0.194740.998
48_R55_D0.185910.953
21_T35_Q0.184540.946
21_T24_T0.183680.942
32_F38_G0.181550.931
28_I42_S0.178140.913
9_G25_C0.177090.908
23_S26_P0.173610.890
4_C7_F0.172070.882
47_W55_D0.169050.867
28_I45_L0.167380.858
13_P43_D0.165670.849
10_R35_Q0.163120.836
26_P29_D0.162370.832
20_Y25_C0.161420.828
14_D26_P0.158980.815
38_G41_D0.158630.813
40_P46_K0.158580.813
19_L44_Y0.157370.807
6_Y29_D0.156760.804
3_R36_K0.152690.783
23_S30_E0.152380.781
18_P44_Y0.152210.780
17_Y21_T0.150550.772
29_D37_N0.149340.766
6_Y31_G0.149320.766
26_P32_F0.149030.764
10_R50_Q0.148610.762
5_D20_Y0.148250.760
8_D31_G0.148210.760
18_P40_P0.147440.756
15_P50_Q0.146160.749
8_D37_N0.145850.748
43_D46_K0.144390.740
20_Y41_D0.143370.735
31_G47_W0.140270.719
21_T45_L0.140080.718
16_S53_G0.139710.716
22_N33_N0.139580.716
21_T29_D0.139470.715
23_S53_G0.137430.705
33_N51_P0.136730.701
12_V50_Q0.136670.701
9_G20_Y0.136660.701
22_N32_F0.135990.697
Legend: The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction. These are to be used for relative ranking only.
HHsearch Results:
PDB Cov Prob HH_delta
1l6jA14.10.916
3c8jA0.85453.30.919
1fjrA12.90.921
3g8lA0.87272.60.923
1u5mA0.49092.40.925
1mpuA0.89092.30.925
1okiA0.90912.20.926
3bdwA0.890920.927
1hq8A0.890920.927
1h12A0.76361.90.928
If you are interested in a protein containing this domain,
drop us a note and we'll try to predict the structure for you.

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