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Archive: 2012 - 2013
PFAM CLAN Length Sequences Seq/Len HH_delta Name
PF00046CL012357452379.35-0.206Homeobox
PF00126CL01236051560859.33-0.048HTH_1
PF00157CL012375718595.800.243Pou
PF00165CL012342464211105.26-0.055HTH_AraC
PF00178CL0123852903.41-0.026Ets
PF00196CL01235837882653.14-0.042GerE
PF00249CL0123487572157.75-0.09Myb_DNA-binding
PF00292CL0123125391931.350.21PAX
PF00325CL012332546321707.25-0.087Crp
PF00356CL01234641282897.43-0.056LacI
PF00376CL01233813355351.45-0.068MerR
PF00392CL01236428587446.67-0.126GntR
PF00440CL01234740296857.36-0.103TetR_N
PF00447CL0123103103610.06-0.027HSF_DNA-bind
PF00486CL01237718384238.75-0.114Trans_reg_C
PF01022CL012347573461220.13-0.052HTH_5
PF01047CL01235947610806.95-0.078MarR
PF01051CL012322211004.950.095Rep_3
PF01316CL01237013945199.210.226Arg_repressor
PF01325CL01236032379539.650.015Fe_dep_repress
PF01371CL012387343739.510.269Trp_repressor
PF01381CL01235539346715.38-0.139HTH_3
PF01399CL0123105229421.850.051PCI
PF01418CL01237712985168.640.073HTH_6
PF01475CL0123120632352.690.097FUR
PF01498CL012372135018.750.267HTH_Tnp_Tc3_2
PF01527CL012376357547.040.175HTH_Tnp_1
PF01638CL01239031276347.510.023HxlR
PF01710CL0123119797767.030.319HTH_Tnp_IS630
PF01726CL01236548253742.350.005LexA_DNA_bind
PF01978CL01236841971617.22-0.029TrmB
PF02001CL01231066746.360.486DUF134
PF02002CL012310525674244.510.146TFIIE_alpha
PF02082CL01238312899155.41-0.035Rrf2
PF02257CL0123856397.520.218RFX_DNA_binding
PF02295CL01236650649767.410.039z-alpha
PF02316CL0123144810.560.498HTH_Tnp_Mu_1
PF02319CL0123714546.390.042E2F_TDP
PF02334CL0123122291623.900.229RTP
PF02650CL0123855045.93-0.009HTH_WhiA
PF02742CL012371142820.110.115Fe_dep_repr_C
PF02796CL012345461521025.60-0.08HTH_7
PF02954CL012342479981142.81-0.05HTH_8
PF03221CL012366144421.880.085HTH_Tnp_Tc5
PF03288CL0123861992.310.278Pox_D5
PF03297CL01231052041.94-0.027Ribosomal_S25
PF03399CL01232046012.950.075SAC3_GANP
PF03428CL01231773451.950.7RP-C
PF03444CL01237826928345.230.195HrcA_DNA-bdg
PF03551CL01237526631355.080.016PadR
PF03789CL012322853.860.69ELK
PF03962CL01231883311.760.862Mnd1
PF03965CL012311519185166.830.084Penicillinase_R
PF04079CL012315913778.660.018DUF387
PF04182CL01237532008426.770.02B-block_TFIIIC
PF04218CL01235345166852.190.045CENP-B_N
PF04297CL01231013923.880.597UPF0122
PF04539CL012378361746.370.051Sigma70_r3
PF04542CL01237117478246.17-0.032Sigma70_r2
PF04545CL012350529941059.88-0.084Sigma70_r4
PF04552CL01231608895.560.527Sigma54_DBD
PF04703CL01236242833690.850.068FaeA
PF04760CL012354222341.170.199IF2_N
PF04796CL01231611250.780.901RepA_C
PF04963CL012319411115.730.324Sigma54_CBD
PF04967CL01235348140908.300.13HTH_10
PF05043CL012387168019.310.182Mga
PF05066CL0123725507.640.182HARE-HTH
PF05158CL01233271710.520.763RNA_pol_Rpc34
PF05225CL012345516201147.11-0HTH_psq
PF05269CL0123915405.930.312Phage_CII
PF05331CL01231144714.130.87DUF742
PF05339CL012313890.070.198DUF739
PF05584CL01237234696481.890.035Sulfolobus_pRN
PF05732CL0123165670.410.849RepL
PF05920CL012340370292.55-0.115Homeobox_KN
PF05930CL01235116333320.25-0.024Phage_AlpA
PF06056CL01235820472352.970.117Terminase_5
PF06163CL012312712409.760.53DUF977
PF06224CL01233278342.550.927HTH_42
PF06413CL0123225390.170.943Neugrin
PF06504CL01232812010.720.788RepC
PF06530CL0123125419533.560.433Phage_antitermQ
PF06576CL0123176530.300.952DUF1133
PF06627CL0123903413.790.241DUF1153
PF06969CL012366288443.700.053HemN_C
PF06970CL0123762873.780.782RepA_N
PF06971CL012350286257.240.102Put_DNA-bind_N
PF07022CL01236629609448.620.033Phage_CI_repr
PF07037CL01231222942.410.571DUF1323
PF07042CL01232822130.760.791TrfA
PF07106CL01231693351.980.833TBPIP
PF07278CL01231523702.430.756DUF1441
PF07374CL0123100223422.340.332DUF1492
PF07381CL01239020370226.330.194DUF1495
PF07453CL0123372657.160.357NUMOD1
PF07544CL0123831051.270.789Med9
PF07638CL012318520102108.660.118Sigma70_ECF
PF07750CL01231622081.280.863GcrA
PF07825CL0123772893.750.154Exc
PF07848CL01237033726481.800.149PaaX
PF07900CL0123220230.100.914DUF1670
PF08100CL012351157230.820.065Dimerisation
PF08220CL01235748270846.840.036HTH_DeoR
PF08221CL01236234959563.850.067HTH_9
PF08222CL01236134541566.250.132HTH_CodY
PF08279CL01235533734613.35-0.033HTH_11
PF08280CL01235917245292.290.104HTH_Mga
PF08281CL01235444894831.37-0.049Sigma70_r4_2
PF08299CL012370138719.81-0.089Bac_DnaA_C
PF08461CL01236646550705.300.156HTH_12
PF08535CL012393521856.110.279KorB
PF08667CL01231479206.260.338BetR
PF08765CL01231086145.690.118Mor
PF08784CL01231021101.080.331RPA_C
PF08822CL0123165960.580.864DUF1804
PF08876CL01231052872.730.833DUF1836
PF08914CL012365318448.980.116Myb_DNA-bind_2
PF08965CL01231183903.310.134DUF1870
PF09012CL0123697091102.770.171FeoC
PF09035CL0123677718115.190.034Tn916-Xis
PF09039CL01231085415.010.297HTH_Tnp_Mu_2
PF09048CL01235926890455.760.107Cro
PF09114CL01239637101386.470.218MotA_activ
PF09182CL01237028816411.660.145PuR_N
PF09197CL0123105340.320.216Rap1-DNA-bind
PF09202CL01238251953633.570.196Rio2_N
PF09278CL012365583489.750.048MerR-DNA-bind
PF09339CL012352538301035.19-0.083HTH_IclR
PF09382CL0123106157514.860.104RQC
PF09397CL012365121718.72-0.038Ftsk_gamma
PF09607CL0123589823169.360.114BrkDBD
PF09645CL012311040.040.055F-112
PF09681CL01231211621.340.887Phage_rep_org_N
PF09756CL01231881100.590.564DDRGK
PF09862CL01231134213.730.566DUF2089
PF09904CL01239035217391.300.106HTH_43
PF10007CL01239220857226.710.145DUF2250
PF10075CL01231439246.460.228PCI_Csn8
PF10078CL012389410.460.87DUF2316
PF10134CL01232294592.000.743RPA
PF10545CL01238586410.160.581MADF_DNA_bdg
PF10668CL0123609996166.600.24Phage_terminase
PF11313CL01238533215390.760.182DUF3116
PF11427CL012350548661097.32-0.033HTH_Tnp_Tc3_1
PF11569CL012356389569.55-0.126Homez
PF11972CL01235427371506.870.197HTH_13
PF12116CL0123823874.720.424SpoIIID
PF12298CL0123172840.490.929Bot1p
PF12323CL012346146631.870.791HTH_OrfB_IS605
PF12324CL012377500.650.267HTH_15
PF12645CL01236511622178.800.087HTH_16
PF12728CL01235119040373.33-0.002HTH_17
PF12759CL01234630670666.740.015HTH_Tnp_IS1
PF12776CL0123967267.560.542Myb_DNA-bind_3
PF12793CL012311520193175.590.17SgrR_N
PF12802CL01236246691753.08-0.068MarR_2
PF12824CL0123164920.560.922MRP-L20
PF12833CL01238127294336.96-0.09HTH_18
PF12840CL01236151866850.26-0.019HTH_20
PF12844CL01236436733573.95-0.118HTH_19
PF12872CL01237474710.090.148OST-HTH
PF12964CL0123965205.420.459DUF3853
PF13011CL0123858792103.440.315LZ_Tnp_IS481
PF13022CL01231421060.750.423HTH_Tnp_1_2
PF13048CL0123127160.130.936DUF3908
PF13276CL012360354759.120.521HTH_21
PF13309CL012364161725.270.395HTH_22
PF13338CL0123124171613.840.479DUF4095
PF13384CL01235041191823.820.037HTH_23
PF13404CL012342550101309.76-0.106HTH_AsnC-type
PF13411CL01236912270177.83-0.009MerR_1
PF13412CL012348575351198.65-0.05HTH_24
PF13413CL01236238714624.42-0.043HTH_25
PF13443CL01236337552596.06-0.092HTH_26
PF13463CL01236853936793.18-0.054HTH_27
PF13518CL01235226748514.380.083HTH_28
PF13542CL01235232120617.690.092HTH_Tnp_ISL3
PF13545CL012376526869.320.028HTH_Crp_2
PF13551CL0123112762368.060.164HTH_29
PF13556CL01235920844353.29-0.012HTH_30
PF13560CL01236436789574.83-0.057HTH_31
PF13565CL012377385250.030.318HTH_32
PF13591CL0123848591102.27-0MerR_2
PF13592CL012360106417.730.389HTH_33
PF13601CL01238042099526.240.022HTH_34
PF13613CL01235352523991.000.006HTH_Tnp_4
PF13693CL01237810626136.230.164HTH_35
PF13730CL01235534156621.020.057HTH_36
PF13744CL01238012049150.610.055HTH_37
PF13814CL01231913761.970.783Replic_Relax
PF13837CL012390116012.890.208Myb_DNA-bind_4
PF13873CL012378150419.280.302Myb_DNA-bind_5
PF13921CL012360554292.37-0.082Myb_DNA-bind_6
PF13936CL012344515801172.27-0.062HTH_38
PF14090CL0123702143.060.745HTH_39
PF14277CL01231631260.770.862DUF4364
PF14493CL012391302233.210.096HTH_40
PF14502CL01234847094981.12-0.021HTH_41
PF14549CL01236024434407.230.105P22_Cro
PF14557CL012317511556.600.172AphA_like
PF14947CL01237736129469.210.154HTH_45

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