GREMLIN.BAKERLAB.org

Archive: 2012 - 2013
List of Protein Families for which there are >5L sequences, HH_delta > 0.5 (no homolog) and Length > 50.
If you are interested in a protein containing a domain from this list, drop us a note and we'll try to predict the structure for you.
PFAM CLAN Length Sequences Seq/Len HH_delta Name
PF0003831220626.610.543Filament
PF0009415913658.580.731VWD
PF0014631130199.710.971NADHdh
PF00335CL034722116737.570.707Tetraspannin
PF0037951148029.020.842Chitin_bind_4
PF00430CL0255132192014.550.691ATP-synt_B
PF00487257307511.960.938FA_desaturase
PF0055919212556.540.837Vif
PF00822CL037516614498.730.914PMP22_Claudin
PF00854CL0015372459312.350.504PTR2
PF00895CL025554242344.870.821ATP-synt_8
PF0091998256126.130.834UPF0004
PF00953159255116.040.933Glycos_transf_4
PF009541108237.480.805S_locus_glycop
PF00999CL0064384599015.600.597Na_H_Exchanger
PF0101024214646.050.913Oxidored_q1_C
PF01027CL045320516998.290.92Bax1-I
PF01040257258010.040.953UbiA
PF01059110235021.360.771Oxidored_q5_N
PF01061CL0181209879342.070.927ABC2_membrane
PF01066101113211.210.882CDP-OH_P_transf
PF01098CL014235830778.590.975FTSW_RODA_SPOVE
PF01105CL05211829675.310.842EMP24_GP25L
PF0113623318848.090.92Peptidase_U32
PF01148CL023425918537.150.969CTP_transf_1
PF01169CL029278110314.140.91UPF0016
PF01252148166211.230.947Peptidase_A8
PF01284CL039614413649.470.932MARVEL
PF01313CL03157678410.320.915Bac_export_3
PF01348CL03591469966.820.927Intron_maturas2
PF0138522720168.880.941OrfB_IS605
PF01484534388.260.794Col_cuticle_N
PF01486100154815.480.86K-box
PF01529CL016717415719.030.937zf-DHHC
PF01548144194613.510.823DEDD_Tnp_IS110
PF015621319006.870.931Pep_M12B_propep
PF01578CL032821415597.290.948Cytochrom_C_asm
PF01594327390311.940.952UPF0118
PF01595183304116.620.926DUF21
PF01618139271019.500.91MotA_ExbB
PF016795156111.000.879Pmp3
PF01757CL0316340537915.820.948Acyl_transf_3
PF0179024916496.620.969LGT
PF01794CL0328125183314.660.885Ferric_reduct
PF0180968126518.600.907Haemolytic
PF01810CL0292191612532.070.928LysE
PF0182282104012.680.887WSC
PF0182714110167.210.892FTH
PF01882CL012886187021.740.536DUF58
PF01914CL0292203303914.970.941MarC
PF01925CL0292240489320.390.922TauE
PF01935CL0023229643728.110.537DUF87
PF01957CL0252144145410.100.506NfeD
PF02049967457.760.908FliE
PF02096CL037619617699.030.94860KD_IMP
PF0230813410898.130.936MgtC
PF0232575134117.880.892YGGT
PF02326CL025586143916.730.687YMF19
PF02361224224610.030.944CbiQ
PF02366CL011124517056.960.585PMT
PF02371CL019887190921.940.8Transposase_20
PF02397187296115.830.956Bac_transf
PF0240521513256.160.946Permease
PF02417169233813.830.95Chromate_transp
PF02465997697.770.882FliD_N
PF024661287916.180.918Tim17
PF02467666029.120.854Whib
PF0247081359344.360.828MCE
PF02494CL0159815296.530.513HYR
PF0249887111012.760.884Bro-N
PF0250819011826.220.955Rnf-Nqr
PF02517CL047291415745.680.898Abi
PF02537CL0184117199217.030.923CRCB
PF0258882388547.380.899DUF161
PF02620119128510.800.92DUF177
PF02653CL01422671198544.890.878BPD_transp_2
PF026567380511.030.834DUF202
PF02659CL029267128819.220.867DUF204
PF0266017812326.920.962G3P_acyltransf
PF0266620214177.010.782PS_Dcarbxylase
PF02673CL029225914855.730.964BacA
PF02674CL029214611537.900.902Colicin_V
PF02683CL0549211479522.730.936DsbD
PF02687CL040412113361110.420.809FtsX
PF02690142164711.600.904Na_Pi_cotrans
PF0269982124315.160.585YajC
PF02706152287218.890.761Wzz
PF02893CL02666982411.940.571GRAM
PF029511198937.500.551GSH-S_N
PF0300622214766.650.972HlyIII
PF03050CL021927119157.070.894DDE_Tnp_IS66
PF030731488635.830.912TspO_MBR
PF03083CL014187185621.330.878MtN3_slv
PF03101CL0274915265.780.813FAR1
PF03109CL0016119248020.840.72ABC1
PF03134945175.500.938TB2_DP1_HVA22
PF03188CL03281379036.590.876Cytochrom_B561
PF03279CL022829516785.690.883Lip_A_acyltrans
PF03334817479.220.91PhaG_MnhG_YufB
PF03379CL0181215708732.960.928CcmB
PF03382CL002212011759.790.725DUF285
PF0345880178922.360.887UPF0126
PF03478534137.790.848DUF295
PF03504957758.160.682Chlam_OMP6
PF03553CL018230323117.630.787Na_H_antiporter
PF0359114310657.450.945AzlC
PF03606CL018246340938.840.601DcuC
PF03626755947.920.855COX4_pro
PF0363126019397.460.937Virul_fac_BrkB
PF03653CL043014711727.970.889UPF0093
PF0369285144617.010.873CxxCxxCC
PF03703CL026680154019.250.759bPH_2
PF0370629519786.710.941UPF0104
PF037076289914.500.816MHYT
PF0372972134518.680.813DUF308
PF03732CL052396149915.610.78Retrotrans_gag
PF037335378614.830.894DUF307
PF03741CL0292183508127.770.931TerC
PF03748999129.210.847FliL
PF037551599085.710.937YicC_N
PF0377227114715.430.96Competence
PF03779513256.370.836SPW
PF03780108119611.070.806Asp23
PF03788967337.640.915LrgA
PF0379819810055.080.962TRAM_LAG1_CLN8
PF038081728795.110.923Glyco_tran_WecB
PF038571388095.860.839Colicin_im
PF03899CL04781005235.230.815ATP_synt_I
PF03988553937.150.841DUF347
PF03993776448.360.856DUF349
PF039945461811.440.84DUF350
PF040201086726.220.945DUF360
PF0402461116719.130.869PspC
PF040391246835.510.942MnhB
PF040665563211.490.82MrpF_PhaF
PF04082CL0507261455417.450.675Fungal_trans
PF04083CL00286375912.050.563Abhydro_lipase
PF04093CL03151608065.040.781MreD
PF04116114219619.260.938FA_hydroxylase
PF041176879811.740.869Mpv17_PMP22
PF0412292134614.630.859CW_binding_2
PF041341137876.960.832DUF393
PF04138117184115.740.89GtrA
PF04142CL01842381618267.990.714Nuc_sug_transp
PF041495697917.480.865DUF397
PF04193CL014161215835.380.861PQ-loop
PF04214703945.630.892DUF411
PF042331127806.960.87Phage_Mu_F
PF04241896307.080.89DUF423
PF042471237516.110.952SirB
PF042791768895.050.92IspA
PF04290133291821.940.923DctQ
PF04304716138.630.863DUF454
PF04341915185.690.876DUF485
PF043431228847.250.873DUF488
PF04376CL0257804715.890.907ATE_N
PF0440221010795.140.932SIMPL
PF04413CL0113186410922.090.514Glycos_transf_N
PF04422825316.480.863FrhB_FdhB_N
PF044631437215.040.944DUF523
PF04468886417.280.9PSP1
PF04519101101310.030.757Bactofilin
PF04612CL03311608525.330.547T2SM
PF04657CL01841387695.570.858DUF606
PF047491065875.540.912PLAC8
PF0477398273527.910.849FecR
PF04854774165.400.886DUF624
PF04883CL03481066636.250.881HK97-gp10_like
PF04932CL0499163226813.910.911Wzy_C
PF04977CL022580174321.790.797DivIC
PF04999CL022597102010.520.815FtsL
PF051026162410.230.847Holin_BlyA
PF05137CL0331787489.590.732PilN
PF051545172114.140.86TM2
PF05159CL011326923638.780.511Capsule_synth
PF05232675067.550.901BTP
PF05258CL04248990610.180.812DUF721
PF05272CL0023198210110.610.633VirE
PF05347CL049159111918.970.82Complex1_LYR
PF05378CL010817613447.640.835Hydant_A_N
PF05425CL04301057997.610.821CopD
PF0543799112411.350.902AzlD
PF054887680210.550.878PAAR_motif
PF05506894685.260.822DUF756
PF05514CL01311388836.400.942HR_lesion
PF05525CL006242742539.960.627Branch_AA_trans
PF05581103257825.030.511MCP_N
PF0559877117515.260.788DUF772
PF05631CL0015354573316.190.52DUF791
PF05653CL01843001272842.430.741Mg_trans_NIPA
PF056561178557.310.927DUF805
PF0567090105811.760.899DUF814
PF057171075425.070.936TnpB_IS66
PF05730666349.610.862CFEM
PF05957CL0406945295.630.795DUF883
PF06027CL0184334929127.820.745DUF914
PF06081CL0307141229416.270.94DUF939
PF06107573015.280.902DUF951
PF06130715027.070.843PduL
PF06146694456.450.877PsiE
PF06182CL0181229524122.890.936ABC2_membrane_6
PF06271137177612.960.927RDD
PF063056869810.260.799DUF1049
PF06379CL01843441191634.640.776RhaT
PF06422CL01811036035.850.929PDR_CDR
PF0644456555699.210.747NADH_dehy_S2_C
PF06480110117710.700.528FtsH_ext
PF0658082289035.240.886His_kinase
PF06609CL001559946347.740.656TRI12
PF06653CL037516412397.550.93Claudin_3
PF06686583996.880.862SpoIIIAC
PF06695121429535.500.906Sm_multidrug_ex
PF06719CL00291559255.970.695AraC_N
PF06722CL0113975745.920.514DUF1205
PF06724733735.110.889DUF1206
PF06738CL04701939634.990.933DUF1212
PF06750928919.680.905DiS_P_DiS
PF06800CL01842691343049.930.724Sugar_transport
PF06812624727.610.857ImpA-rel_N
PF06817703474.960.573RVT_thumb
PF06826CL00641698465.010.918Asp-Al_Ex
PF06832CL0159894915.520.555BiPBP_C
PF069455153610.510.85DUF1289
PF06949765337.010.851DUF1292
PF06961554838.780.893DUF1294
PF069741537624.980.74DUF1298
PF06985138153011.090.927HET
PF07002CL012814612718.710.506Copine
PF07127543907.220.796Nodulin_late
PF07196564898.730.526Flagellin_IN
PF07282CL016769250636.320.652OrfB_Zn_ribbon
PF07308683394.990.88DUF1456
PF0733114210037.060.905TctB
PF073321216685.520.837DUF1469
PF07344CL037515511877.660.909Amastin
PF07508102211620.750.658Recombinase
PF07532CL0159593065.190.8Big_4
PF07536CL002583149718.040.736HWE_HK
PF07568CL002576143118.830.703HisKA_2
PF0758477131017.010.823BatA
PF07593714476.300.882UnbV_ASPIC
PF07603684336.370.798DUF1566
PF076247676010.000.79PSD2
PF07635CL03185975012.710.72PSCyt1
PF0766454127523.610.859FeoB_C
PF07670109330430.310.717Gate
PF07681CL013185302235.550.885DoxX
PF0773570176425.200.85FBA_2
PF07853514418.650.86DUF1648
PF08011CL02361055605.330.792DUF1703
PF08044533977.490.821DUF1707
PF08154653224.950.825NLE
PF0816716511917.220.507RIX1
PF08268CL01621298806.820.822FBA_3
PF08276CL01686787213.010.675PAN_2
PF08310544057.500.853LGFP
PF08331787409.490.876DUF1730
PF08340876237.160.921DUF1732
PF08348CL018311810598.970.63PAS_6
PF0835264542084.690.705oligo_HPY
PF08373CL0236584217.260.533RAP
PF08378CL02361098037.370.752NERD
PF083875162612.270.849FBD
PF08388CL03598094811.850.88GIIM
PF08406864815.590.809CbbQ_C
PF08415584177.190.821NRPS
PF084381097076.490.514MMR_HSR1_C
PF08449CL01843031420146.870.741UAA
PF08486967517.820.917SpoIID
PF08700CL0295875286.070.774Vps51
PF08708714005.630.846PriCT_1
PF087427483211.240.899C8
PF09333985245.350.906ATG_C
PF09335123505041.060.888SNARE_assoc
PF09350713524.960.861DUF1992
PF09369847699.150.889DUF1998
PF095275563511.550.818ATPase_gene1
PF096565375314.210.827PGPGW
PF09669925495.970.878Phage_pRha
PF096851078057.520.897Tic20
PF09722545169.560.747DUF2384
PF099221155925.150.896DUF2154
PF10027CL04301509406.270.892DUF2269
PF1004385134715.850.908DUF2279
PF10129CL031635821486.000.96OpgC_C
PF10242CL037518112697.010.932L_HGMIC_fpl
PF10296915616.160.877DUF2404
PF10342CL0538975435.600.713GPI-anchored
PF10348CL03281058738.310.9DUF2427
PF103671098728.000.591Vps39_2
PF10544CL04181008578.570.555T5orf172
PF10545CL0123856617.780.576MADF_DNA_bdg
PF10551CL021993192320.680.866MULE
PF10601734466.110.849zf-LITAF-like
PF106461177596.490.885Germane
PF10722CL00971277075.570.558YbjN
PF10825523506.730.868DUF2752
PF11028CL011117813167.390.643DUF2723
PF111276690113.650.885DUF2892
PF11139CL0549214657630.730.94DUF2910
PF111811036486.290.834YflT
PF11391605388.970.831DUF2798
PF11700CL001547731236.550.525ATG22
PF11751CL019327413695.000.513DUF3308
PF118211738725.040.891DUF3341
PF11929CL046576108814.320.748DUF3447
PF11951CL050738220115.260.948Fungal_trans_2
PF12051CL018138218974.970.773DUF3533
PF12245CL0159604667.770.555Big_3_2
PF12367673525.250.884PFO_beta_C
PF1262518913737.260.927Arabinose_bd
PF12679CL0181277459716.600.897ABC2_membrane_2
PF12698CL018134433519.740.733ABC2_membrane_3
PF12730CL018123221619.310.925ABC2_membrane_4
PF128061299357.250.827Acyl-CoA_dh_C
PF12821CL0470130143411.030.893DUF3815
PF12848CL002385355941.870.846ABC_tran_2
PF12852CL002918611836.360.518Cupin_6
PF1291156474784.770.719OppC_N
PF13004584397.570.803BACON
PF130055969511.780.748zf-IS66
PF13007786538.370.852LZ_Tnp_IS66
PF13102CL046913811948.650.668Phage_int_SAM_5
PF13115CL0488866367.400.684YtkA
PF1318664251839.340.615SPASM
PF13231CL0111159392424.680.51PMT_2
PF13232CL049161115418.920.808Complex1_LYR_1
PF13274995255.300.857DUF4065
PF13276CL012360266544.420.596HTH_21
PF13280172239513.920.918WYL
PF13289CL00851408245.890.791SIR2_2
PF13335CL002396125513.070.693Mg_chelatase_2
PF1334075100213.360.872DUF4096
PF13342CL01676265610.580.792Toprim_Crpt
PF13359CL0219153224914.700.902DDE_Tnp_4
PF133686193415.310.846Toprim_C_rpt
PF13375CL01051017827.740.676RnfC_N
PF13376CL0021635689.020.79OmdA
PF13386CL0549199262613.200.92DsbD_2
PF13391CL02636874911.010.699HNH_2
PF13399908098.990.87LytR_C
PF13408CL016758172629.760.714Zn_ribbon_recom
PF13421CL0433211307914.590.52Band_7_1
PF13425CL0499137300721.950.922O-antigen_lig
PF13438756448.590.842DUF4113
PF13455CL0418835076.110.836MUG113
PF13464777279.440.793DUF4115
PF1349117110075.890.931DUF4117
PF13502CL040122015867.210.925AsmA_2
PF13515CL0307128229717.950.924FUSC_2
PF13542CL01236581612.550.742HTH_Tnp_ISL3
PF13559717089.970.739DUF4129
PF13564CL0131103170916.590.919DoxX_2
PF13568CL019317316579.580.574OMP_b-brl_2
PF13586CL021988213024.200.649DDE_Tnp_1_2
PF13592CL0123605589.300.54HTH_33
PF13612CL0219155163910.570.724DDE_Tnp_1_3
PF13613CL0123957567.960.652HTH_Tnp_4
PF13623CL02621457265.010.576SurA_N_2
PF13629CL0159724686.500.697T2SS-T3SS_pil_N
PF13635CL0236918018.800.748DUF4143
PF13643CL0291875205.980.734DUF4145
PF136775876313.160.858MotB_plug
PF13699CL0126794735.990.775DUF4157
PF13703CL049088121213.770.863PepSY_TM_2
PF13711663485.270.864DUF4160
PF137211016926.850.682SecD-TM1
PF13726CL018288275731.330.703Na_H_antiport_2
PF1373284535163.700.782DUF4162
PF13751CL02191256445.150.907DDE_Tnp_1_6
PF13757CL0029784796.140.724VIT_2
PF13792CL006284205924.510.807Sulfate_tra_GLY
PF1380782185822.660.834GNVR
PF13813CL051783135816.360.89MBOAT_2
PF13828635719.060.84DUF4190
PF13853CL01921441141379.260.7717tm_4
PF13900CL00935165512.840.903GVQW
PF13903CL037517214008.140.923Claudin_2
PF139471066976.580.927GUB_WAK_bind
PF13959655638.660.734DUF4217
PF13966867408.600.879zf-RVT
PF13976675287.880.678gag_pre-integrs
PF14223CL052311910708.990.861UBN2
PF14227CL052311910498.820.851UBN2_2
PF14241625258.470.854DUF4341
PF14244CL052315110697.080.92UBN2_3
PF142615969811.830.791DUF4351
PF14278987988.140.538TetR_C_8
PF142891066726.340.854DUF4369
PF14311553135.690.77DUF4379
PF14317623665.900.735YcxB
PF143415186116.880.577PilX_N
PF14384623405.480.75DUF4415
PF14416554107.450.924PMR5N
PF14417CL0023191209210.950.502MEDS
PF14432CL01091149508.330.927DYW_deaminase
PF14510854565.360.899ABC_trans_N
PF14525CL002917215168.810.575AraC_binding_2

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