Submissions - CASP11
Submissions - CASP12
ECOLI - Monomer
ECOLI - Complexes
Predictions (No Structure)
Submit Sequence for Coevolution Analysis
Note, due to limited resources your submission may take forever to complete (Jobs Running: 11).
(Will only be used to send you notice of Completion/Error).
Alignment must be in FASTA format. Alternatively, you may provide a single sequence in plain text or in FASTA format.
: We treat your input as a "starting alignment" which is then enriched using HHblits. If Jackhmmer is selected only the first (or query) sequence is used. [20 < query_length < 1000]
if you wish to submit a sequence larger than the limit.
We have a seperate
for protein-protein coevolution analysis.
Generate MSA using:
HHblits and Jackhmmer are methods used to generate the Multiple Sequence Alignment (MSA).
<E-value/Iterations> options are used to control the diversity of MSA generation.
To use your own alignment
, without MSA enrichment, set Iterations to 0.
<Coverage> Filter MSA to remove sequences that don't cover at least (%) of query.
<Remove gaps> After coverage filter, remove positions in the alignment that have (%) gaps.
works right now, other options are under construction.
Vanilla - Pure sequence based analysis (no prior).
SS - Add Secondary Structure prior, based on PSIPRED predictions.
SVM - Add SVM-CON prior.
1 + 2 =
List results for others to see.
UniProt Database Update:
(HHblits: 2016_02) (Jackhmmer: 2016_04)